hierfstat: pairwise.betas – R documentation

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pairwise.betas

Estimates pairwise betas according to Weir and Goudet (2017)

Estimates pairwise betas according to Weir and Goudet (2017)

pairwise.betas(dat,diploid=TRUE)

`dat`	A data frame containing population of origin as the first column and multi-locus genotypes in following columns
`diploid`	whether the data is from a diploid (default) or haploid organism

a matrix of pairwise betas

Weir, BS and Goudet J. 2017 A Unified Characterization of Population Structure and Relatedness. Genetics (2017) 206:2085

data(gtrunchier)
pairwise.betas(gtrunchier[,-2],diploid=TRUE)

Estimation and Tests of Hierarchical F-Statistics

v0.5-10

GPL (>= 2)

Authors

Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb]

Initial release

2021-11-16