hierfstat: pairwise.neifst – R documentation

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pairwise.neifst

Estimates pairwise FSTs according to Nei (1987)

Estimate pairwise FSTs according to Nei (1987)

pairwise.neifst(dat,diploid=TRUE)

`dat`	A data frame containing population of origin as the first column and multi-locus genotypes in following columns
`diploid`	whether the data is from a diploid (default) or haploid organism

FST are calculated using Nei (87) equations for FST', as described in the note section of basic.stats

A matrix of pairwise FSTs

Nei, M. (1987) Molecular Evolutionary Genetics. Columbia University Press

data(gtrunchier)
pairwise.neifst(gtrunchier[,-2],diploid=TRUE)

Estimation and Tests of Hierarchical F-Statistics

v0.5-10

GPL (>= 2)

Authors

Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb]

Initial release

2021-11-16