hierfstat: pcoa – R documentation

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pcoa

Principal coordinate analysis

principal coordinates analysis as described in Legendre & Legendre Numerical Ecology

pcoa(mat,plotit=TRUE,...)

`mat`	a distance matrix
`plotit`	Whether to produce a plot of the pcoa
`...`	further arguments (graphical for instance) to pass to the function

`valp`	the eigen values of the pcoa
`vecp`	the eigen vectors of the pcoa (the coordinates of observations)
`eucl`	The cumulative euclidian distances among observations,

data(gtrunchier)
colo<-c("black","red","blue","yellow","orange","green")
pcoa(as.matrix(genet.dist(gtrunchier[,-1])),col=rep(colo,c(5,5,4,5,5,5)))

Estimation and Tests of Hierarchical F-Statistics

v0.5-10

GPL (>= 2)

Authors

Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb]

Initial release

2021-11-16