Tests the significance of the effect of inner.level on genetic differentiation within blocks defined by outer.level
Tests the significance of the effect of inner.level on genetic differentiation within blocks defined by outer.level
test.within(data, within, test.lev, nperm, ...)
data |
a data frame containing the genotypes for the different loci |
within |
A vector containing the units in which to keep the observations |
test.lev |
A vector containing the units from which to construct the contingency tables |
nperm |
The number of permutations to carry out for the test |
... |
Mainly here to allow passing diploid=FALSE if necessary |
g.star |
A vector containing all the generated g-statistics, the last one beeing the observed |
p.val |
The p-value associated with the test |
Jerome Goudet jerome.goudet@unil.ch
data(gtrunchier) attach(gtrunchier) #tests whether the patch level has a significant effect on genetic structure test.within(gtrunchier[,-c(1,2)],within=Locality,test.lev=Patch)
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