hierfstat: write.struct – R documentation

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write.struct

Write structure file

Write a genotype data set to a file in the structure format

write.struct(dat,ilab=NULL,pop=NULL,MARKERNAMES=FALSE,MISSING=-9,fname="dat.str")

`dat`	a genotype dataframe
`ilab`	an (optional) column with individual labels
`pop`	an (optional) column with population identifiers
`MARKERNAMES`	whether to add a row with marker names. If TRUE, takes the loci names from dat
`MISSING`	The code for missing alleles
`fname`	a string containing the file name (default to "dat.str")

a text file in the structure format

Pritchard JK etal. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959

Estimation and Tests of Hierarchical F-Statistics

v0.5-10

GPL (>= 2)

Authors

Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb]

Initial release

2021-11-16