Plot diagnostics from an mjoint object
Plot diagnostics from an mjoint
object.
## S3 method for class 'mjoint' plot(x, type = "convergence", ...)
x |
an object inheriting from class |
type |
currently the only option is |
... |
other parameters passed to |
Graeme L. Hickey (graemeleehickey@gmail.com)
# Fit a classical univariate joint model with a single longitudinal outcome # and a single time-to-event outcome data(heart.valve) hvd <- heart.valve[!is.na(heart.valve$log.grad) & !is.na(heart.valve$log.lvmi), ] set.seed(1) fit1 <- mjoint(formLongFixed = log.lvmi ~ time + age, formLongRandom = ~ time | num, formSurv = Surv(fuyrs, status) ~ age, data = hvd, timeVar = "time", control = list(nMCscale = 2, burnin = 5)) # controls for illustration only plot(fit1, param = "beta") # LMM fixed effect parameters plot(fit1, param = "gamma") # event model parameters ## Not run: # Fit a joint model with bivariate longitudinal outcomes data(heart.valve) hvd <- heart.valve[!is.na(heart.valve$log.grad) & !is.na(heart.valve$log.lvmi), ] fit2 <- mjoint( formLongFixed = list("grad" = log.grad ~ time + sex + hs, "lvmi" = log.lvmi ~ time + sex), formLongRandom = list("grad" = ~ 1 | num, "lvmi" = ~ time | num), formSurv = Surv(fuyrs, status) ~ age, data = list(hvd, hvd), inits = list("gamma" = c(0.11, 1.51, 0.80)), timeVar = "time", control = list(burnin = 50), verbose = TRUE) plot(fit2, type = "convergence", params = "gamma") ## End(Not run)
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