Description

S4 class for storing summarized MAF.

Slots

data

data.table of MAF file containing all non-synonymous variants.

variants.per.sample

table containing variants per sample

variant.type.summary

table containing variant types per sample

variant.classification.summary

table containing variant classification per sample

gene.summary

table containing variant classification per gene

summary

table with basic MAF summary stats

maf.silent

subset of main MAF containing only silent variants

clinical.data

clinical data associated with each sample/Tumor_Sample_Barcode in MAF.

See Also

getGeneSummary getSampleSummary getFields