extract cytoband summary from GISTIC object
extract cytoband summary from GISTIC object
getCytobandSummary(x) ## S4 method for signature 'GISTIC' getCytobandSummary(x)
x |
An object of class GISTIC |
summarizied gistic results by altered cytobands.
all.lesions <- system.file("extdata", "all_lesions.conf_99.txt", package = "maftools")
amp.genes <- system.file("extdata", "amp_genes.conf_99.txt", package = "maftools")
del.genes <- system.file("extdata", "del_genes.conf_99.txt", package = "maftools")
scores.gistic <- system.file("extdata", "scores.gistic", package = "maftools")
laml.gistic = readGistic(gisticAllLesionsFile = all.lesions, gisticAmpGenesFile = amp.genes, gisticDelGenesFile = del.genes, gisticScoresFile = scores.gistic)
getCytobandSummary(laml.gistic)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.