maftools: getSampleSummary – R documentation

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getSampleSummary

extract sample summary from MAF or GISTIC object

extract sample summary from MAF or GISTIC object

getSampleSummary(x)

## S4 method for signature 'MAF'
getSampleSummary(x)

## S4 method for signature 'GISTIC'
getSampleSummary(x)

`x`	An object of class MAF or GISTIC

sample summary table

laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
getSampleSummary(x = laml)

Summarize, Analyze and Visualize MAF Files

v2.6.05

MIT + file LICENSE

Authors

Anand Mayakonda [aut, cre] (<https://orcid.org/0000-0003-1162-687X>)

Initial release

2015-12-14