Plot density plots from clutering results.
Plots results from inferHeterogeneity.
plotClusters( clusters, tsb = NULL, genes = NULL, showCNvars = FALSE, colors = NULL )
clusters |
clustering results from |
tsb |
sample to plot from clustering results. Default plots all samples from results. |
genes |
genes to highlight on the plot. Can be a vector of gene names, |
showCNvars |
show copy numbered altered variants on the plot. Default FALSE. |
colors |
manual colors for clusters. Default NULL. |
returns nothing.
## Not run:
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf)
seg = system.file('extdata', 'TCGA.AB.3009.hg19.seg.txt', package = 'maftools')
TCGA.AB.3009.clust <- inferHeterogeneity(maf = laml, tsb = 'TCGA-AB-3009',
segFile = seg, vafCol = 'i_TumorVAF_WU')
plotClusters(TCGA.AB.3009.clust, genes = c('NF1', 'SUZ12'), showCNvars = TRUE)
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.