Writes GISTIC summaries to output tab-delimited text files.
Writes GISTIC summaries to output tab-delimited text files.
write.GisticSummary(gistic, basename = NULL)
gistic |
an object of class |
basename |
basename for output file to be written. |
None. Writes output as tab delimited text files.
all.lesions <- system.file("extdata", "all_lesions.conf_99.txt", package = "maftools")
amp.genes <- system.file("extdata", "amp_genes.conf_99.txt", package = "maftools")
del.genes <- system.file("extdata", "del_genes.conf_99.txt", package = "maftools")
scores.gistic <- system.file("extdata", "scores.gistic", package = "maftools")
laml.gistic = readGistic(gisticAllLesionsFile = all.lesions, gisticAmpGenesFile = amp.genes, gisticDelGenesFile = del.genes, gisticScoresFile = scores.gistic)
write.GisticSummary(gistic = laml.gistic, basename = 'laml')Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.