mice: pool.compare – R documentation

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mice

pool.compare

Compare two nested models fitted to imputed data

Description

This function is deprecated in V3. Use D1 or D3 instead.

Usage

pool.compare(fit1, fit0, method = c("wald", "likelihood"), data = NULL)

Arguments

`fit1`	An object of class 'mira', produced by `with.mids()`.
`fit0`	An object of class 'mira', produced by `with.mids()`. The model in `fit0` is a nested fit0 of `fit1`.
`method`	Either `"wald"` or `"likelihood"` specifying the type of comparison. The default is `"wald"`.
`data`	No longer used.

Details

Compares two nested models after m repeated complete data analysis

The function is based on the article of Meng and Rubin (1992). The Wald-method can be found in paragraph 2.2 and the likelihood method can be found in paragraph 3. One could use the Wald method for comparison of linear models obtained with e.g. lm (in with.mids()). The likelihood method should be used in case of logistic regression models obtained with glm() in with.mids().

The function assumes that fit1 is the larger model, and that model fit0 is fully contained in fit1. In case of method='wald', the null hypothesis is tested that the extra parameters are all zero.

Value

A list containing several components. Component call is the call to the pool.compare function. Component call11 is the call that created fit1. Component call12 is the call that created the imputations. Component call01 is the call that created fit0. Component call02 is the call that created the imputations. Components method is the method used to compare two models: 'Wald' or 'likelihood'. Component nmis is the number of missing entries for each variable. Component m is the number of imputations. Component qhat1 is a matrix, containing the estimated coefficients of the m repeated complete data analyses from fit1. Component qhat0 is a matrix, containing the estimated coefficients of the m repeated complete data analyses from fit0. Component ubar1 is the mean of the variances of fit1, formula (3.1.3), Rubin (1987). Component ubar0 is the mean of the variances of fit0, formula (3.1.3), Rubin (1987). Component qbar1 is the pooled estimate of fit1, formula (3.1.2) Rubin (1987). Component qbar0 is the pooled estimate of fit0, formula (3.1.2) Rubin (1987). Component Dm is the test statistic. Component rm is the relative increase in variance due to nonresponse, formula (3.1.7), Rubin (1987). Component df1: df1 = under the null hypothesis it is assumed that Dm has an F distribution with (df1,df2) degrees of freedom. Component df2: df2. Component pvalue is the P-value of testing whether the model fit1 is statistically different from the smaller fit0.

Author(s)

Karin Groothuis-Oudshoorn and Stef van Buuren, 2009

References

Li, K.H., Meng, X.L., Raghunathan, T.E. and Rubin, D. B. (1991). Significance levels from repeated p-values with multiply-imputed data. Statistica Sinica, 1, 65-92.

Meng, X.L. and Rubin, D.B. (1992). Performing likelihood ratio tests with multiple-imputed data sets. Biometrika, 79, 103-111.

van Buuren S and Groothuis-Oudshoorn K (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1-67. https://www.jstatsoft.org/v45/i03/