morse: plot.reproData – R documentation

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plot.reproData

Plotting method for reproData objects

Description

This is the generic plot S3 method for the reproData class. It plots the cumulated number of offspring as a function of time.

Usage

## S3 method for class 'reproData'
plot(
  x,
  xlab,
  ylab = "Cumulated Number of offspring",
  main = NULL,
  concentration = NULL,
  style = "ggplot",
  pool.replicate = FALSE,
  addlegend = FALSE,
  remove.someLabels = FALSE,
  ...
)

Arguments

`x`	an object of class `reproData`
`xlab`	label of the X-axis
`ylab`	label of the Y-axis, by default `Cumulated Number of offspring`
`main`	main title for the plot
`concentration`	a numeric value corresponding to some concentration in `data`. If `concentration = NULL`, draws a plot for each concentration
`style`	graphical backend, can be `'ggplot'` or `'generic'`
`pool.replicate`	if `TRUE`, the datapoints of each replicate are summed for a same concentration
`addlegend`	if `TRUE`, adds a default legend to the plot
`remove.someLabels`	if `TRUE`, removes 3/4 of X-axis labels in `'ggplot'` style to avoid the label overlap
`...`	Further arguments to be passed to generic methods

Note

When style = "generic", the function calls the generic function plot

When style = "ggplot", the function return an object of class gg and ggplot, see function ggplot

Examples

# (1) Load the data
data(cadmium1)

# (2) Create an object of class 'reproData'
cadmium1 <- reproData(cadmium1)

# (3) Plot the reproduction data
plot(cadmium1)

# (4) Plot the reproduction data for a fixed concentration
plot(cadmium1, concentration = 4.36, style = "generic")

morse

Modelling Tools for Reproduction and Survival Data in Ecotoxicology

v3.3.1

GPL (>= 2)

Authors

Virgile Baudrot [aut], Sandrine Charles [aut], Marie Laure Delignette-Muller [aut], Wandrille Duchemin [ctb], Benoit Goussen [ctb], Nils Kehrein [ctb], Guillaume Kon-Kam-King [ctb], Christelle Lopes [ctb], Philippe Ruiz [aut], Alexander Singer [ctb], Philippe Veber [aut]

Initial release