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model_parameters.BFBayesFactor

Parameters from BayesFactor objects


Description

Parameters from BayesFactor objects.

Usage

## S3 method for class 'BFBayesFactor'
model_parameters(
  model,
  centrality = "median",
  dispersion = FALSE,
  ci = 0.89,
  ci_method = "hdi",
  test = c("pd", "rope"),
  rope_range = "default",
  rope_ci = 0.89,
  priors = TRUE,
  verbose = TRUE,
  ...
)

Arguments

model

Object of class BFBayesFactor.

centrality

The point-estimates (centrality indices) to compute. Character (vector) or list with one or more of these options: "median", "mean", "MAP" or "all".

dispersion

Logical, if TRUE, computes indices of dispersion related to the estimate(s) (SD and MAD for mean and median, respectively).

ci

Value or vector of probability of the CI (between 0 and 1) to be estimated. Default to .89 (89%) for Bayesian models and .95 (95%) for frequentist models.

ci_method

The type of index used for Credible Interval. Can be "HDI" (default, see hdi), "ETI" (see eti) or "SI" (see si).

test

The indices of effect existence to compute. Character (vector) or list with one or more of these options: "p_direction" (or "pd"), "rope", "p_map", "equivalence_test" (or "equitest"), "bayesfactor" (or "bf") or "all" to compute all tests. For each "test", the corresponding bayestestR function is called (e.g. rope or p_direction) and its results included in the summary output.

rope_range

ROPE's lower and higher bounds. Should be a list of two values (e.g., c(-0.1, 0.1)) or "default". If "default", the bounds are set to x +- 0.1*SD(response).

rope_ci

The Credible Interval (CI) probability, corresponding to the proportion of HDI, to use for the percentage in ROPE.

priors

Add the prior used for each parameter.

verbose

Toggle warnings and messages.

...

Additional arguments to be passed to or from methods.

Details

The meaning of the extracted parameters:

  • For ttestBF: Difference is the raw difference between the means.

  • For correlationBF: rho is the linear correlation estimate (equivalent to Pearson's r).

  • For lmBF / generalTestBF / regressionBF / anovaBF: in addition to parameters of the fixed and random effects, there are: mu is the (mean-centered) intercept; sig2 is the model's sigma; g / g_* are the g parameters; See the Bayes Factors for ANOVAs paper (doi: 10.1016/j.jmp.2012.08.001).

Value

A data frame of indices related to the model's parameters.

Examples

if (require("BayesFactor")) {
  model <- ttestBF(x = rnorm(100, 1, 1))
  model_parameters(model)
}

parameters

Processing of Model Parameters

v0.13.0
GPL-3
Authors
Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>, @strengejacke), Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>), Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>), Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets), Søren Højsgaard [aut], Zen J. Lau [ctb], Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-1995-6531>, @vincentab), Jeffrey Girard [ctb] (<https://orcid.org/0000-0002-7359-3746>, @jeffreymgirard)
Initial release

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