phangorn: allTrees – R documentation

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allTrees

Compute all trees topologies.

Description

allTrees computes all tree topologies for rooted or unrooted trees with up to 10 tips. allTrees returns bifurcating trees.

Usage

allTrees(n, rooted = FALSE, tip.label = NULL)

Arguments

`n`	Number of tips (<=10).
`rooted`	Rooted or unrooted trees (default: rooted).
`tip.label`	Tip labels.

Value

an object of class multiPhylo.

Author(s)

Klaus Schliep klaus.schliep@gmail.com

Examples

trees <- allTrees(5)

old.par <- par(no.readonly = TRUE)
par(mfrow = c(3,5))
for(i in 1:15)plot(trees[[i]])
par(old.par)

phangorn

Phylogenetic Reconstruction and Analysis

v2.7.0

GPL (>= 2)

Authors

Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>), Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>), Leonardo de Oliveira Martins [aut] (<https://orcid.org/0000-0001-5247-1320>), Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb]

Initial release