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phangorn

cophenetic.networx

Pairwise Distances from a Phylogenetic Network

Description

cophenetic.networx computes the pairwise distances between the pairs of tips from a phylogenetic network using its branch lengths.

Usage

## S3 method for class 'networx'
cophenetic(x)

Arguments

x

an object of class networx.

Value

an object of class dist, names are set according to the tip labels (as given by the element tip.label of the argument x).

Author(s)

Klaus Schliep

See Also

cophenetic for the generic function, neighborNet to construct a network from a distance matrix

phangorn

Phylogenetic Reconstruction and Analysis

v2.7.0
GPL (>= 2)
Authors
Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>), Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>), Leonardo de Oliveira Martins [aut] (<https://orcid.org/0000-0001-5247-1320>), Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb]
Initial release

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