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delta.score

Computes the δ score

Description

Computes the treelikeness

Usage

delta.score(x, arg = "mean", ...)

Arguments

x

an object of class phyDat
arg

Specifies the return value, one of "all", "mean" or "sd"
...

further arguments passed through dist.hamming

Value

A vector containing the δ scores.

Author(s)

Alastair Potts and Klaus Schliep

References

BR Holland, KT Huber, A Dress, V Moulton (2002) δ Plots: a tool for analyzing phylogenetic distance data Russell D. Gray, David Bryant, Simon J. Greenhill (2010) On the shape and fabric of human history Molecular Biology and Evolution, 19(12) 2051–2059

Russell D. Gray, David Bryant, Simon J. Greenhill (2010) On the shape and fabric of human history Phil. Trans. R. Soc. B, 365 3923–3933; DOI: 10.1098/rstb.2010.0162

See Also

Examples

data(yeast)
hist(delta.score(yeast, "all"))
phangorn

Phylogenetic Reconstruction and Analysis

v2.7.0
GPL (>= 2)
Authors
Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>), Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>), Leonardo de Oliveira Martins [aut] (<https://orcid.org/0000-0001-5247-1320>), Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb]
Initial release

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