phangorn: identify.networx – R documentation

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identify.networx

Identify splits in a network

Description

identify.networx reads the position of the graphics pointer when the mouse button is pressed. It then returns the split belonging to the edge closest to the pointer. The network must be plotted beforehand.

Usage

## S3 method for class 'networx'
identify(x, quiet = FALSE, ...)

Arguments

`x`	an object of class `networx`
`quiet`	a logical controlling whether to print a message inviting the user to click on the tree.
`...`	further arguments to be passed to or from other methods.

Value

identify.networx returns a splits object.

Author(s)

Klaus Schliep klaus.schliep@gmail.com

Examples

## Not run: 
data(yeast)
dm <- dist.ml(yeast)
nnet <- neighborNet(dm)
plot(nnet, "2D")
identify(nnet) # click close to an edge

## End(Not run)

phangorn

Phylogenetic Reconstruction and Analysis

v2.7.0

GPL (>= 2)

Authors

Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>), Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>), Leonardo de Oliveira Martins [aut] (<https://orcid.org/0000-0001-5247-1320>), Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb]

Initial release