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lento

Lento plot

Description

The lento plot represents support and conflict of splits/bipartitions.

Usage

lento(obj, xlim = NULL, ylim = NULL, main = "Lento plot", sub = NULL,
  xlab = NULL, ylab = NULL, bipart = TRUE, trivial = FALSE,
  col = rgb(0, 0, 0, 0.5), ...)

Arguments

obj

an object of class phylo, multiPhylo or splits
xlim

graphical parameter
ylim

graphical parameter
main

graphical parameter
sub

graphical parameter
xlab

graphical parameter
ylab

graphical parameter
bipart

plot bipartition information.
trivial

logical, whether to present trivial splits (default is FALSE).
col

color for the splits / bipartition.
...

Further arguments passed to or from other methods.

Value

lento returns a plot.

Author(s)

References

Lento, G.M., Hickson, R.E., Chambers G.K., and Penny, D. (1995) Use of spectral analysis to test hypotheses on the origin of pinninpeds. Molecular Biology and Evolution, 12, 28-52.

See Also

Examples

data(yeast)
yeast.ry <- acgt2ry(yeast)
splits.h <- h2st(yeast.ry)
lento(splits.h, trivial=TRUE)
phangorn

Phylogenetic Reconstruction and Analysis

v2.7.0
GPL (>= 2)
Authors
Klaus Schliep [aut, cre] (<https://orcid.org/0000-0003-2941-0161>), Emmanuel Paradis [aut] (<https://orcid.org/0000-0003-3092-2199>), Leonardo de Oliveira Martins [aut] (<https://orcid.org/0000-0001-5247-1320>), Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb], Keren Halabi [ctb], Richel Bilderbeek [ctb], Kristin Winchell [ctb], Liam Revell [ctb], Mike Gilchrist [ctb], Jeremy Beaulieu [ctb], Brian O'Meara [ctb], Long Qu [ctb]
Initial release

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