Adding data to a phylo4 or a phylo4d object
addData adds data to a phylo4 (converting it in a
phylo4d object) or to a phylo4d object
addData(x, ...)
## S4 method for signature 'phylo4d'
addData(
x,
tip.data = NULL,
node.data = NULL,
all.data = NULL,
merge.data = TRUE,
pos = c("after", "before"),
...
)
## S4 method for signature 'phylo4'
addData(
x,
tip.data = NULL,
node.data = NULL,
all.data = NULL,
merge.data = TRUE,
pos = c("after", "before"),
...
)x |
a phylo4 or a phylo4d object |
... |
additional arguments to control how matching between
data and tree (see Details section of
|
tip.data |
a data frame (or object to be coerced to one) containing only tip data |
node.data |
a data frame (or object to be coerced to one) containing only node data |
all.data |
a data frame (or object to be coerced to one) containing both tip and node data |
merge.data |
if both |
pos |
should the new data provided be bound |
Rules for matching data to tree nodes are identical to those used
by the phylo4d-methods constructor.
If any column names in the original data are the same as columns in the new data, ".old" is appended to the former column names and ".new" is appended to the new column names.
The option pos is ignored (silently) if x is a
phylo4 object. It is provided for compatibility reasons.
addData returns a phylo4d object.
Francois Michonneau
tdata for extracting or updating data and
phylo4d-methods constructor.
data(geospiza)
nDt <- data.frame(a=rnorm(nNodes(geospiza)), b=1:nNodes(geospiza),
row.names=nodeId(geospiza, "internal"))
t1 <- addData(geospiza, node.data=nDt)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.