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phylobase.options

Set or return options of phylobase


Description

Provides a mean to control the validity of phylobase objects such as singletons, reticulated trees, polytomies, etc.

Usage

phylobase.options(...)

Arguments

...

a list may be given as the only argument, or any number of arguments may be in the name=value form, or no argument at all may be given. See the Value and Details sections for explanation.

Details

The parameter values set via a call to this function will remain in effect for the rest of the session, affecting the subsequent behavior of phylobase.

Value

A list with the updated values of the parameters. If arguments are provided, the returned list is invisible.

Author(s)

Francois Michonneau (adapted from the package sm)

Examples

## Not run: 
phylobase.options(poly="fail")
# subsequent trees with polytomies will fail the validity check

## End(Not run)

phylobase

Base Package for Phylogenetic Structures and Comparative Data

v0.8.10
GPL (>= 2)
Authors
R Hackathon et al. (alphabetically: Ben Bolker, Marguerite Butler, Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara, Emmanuel Paradis, Jim Regetz, Derrick Zwickl)
Initial release

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