Bubble plots for phylo4d objects
Plots either circles or squares corresponding to the magnitude of each cell
of a phylo4d object.
phylobubbles( type = type, place.tip.label = "right", show.node.label = show.node.label, rot = 0, edge.color = edge.color, node.color = node.color, tip.color = tip.color, edge.width = edge.width, newpage = TRUE, ..., XXYY, square = FALSE, grid = TRUE )
type |
the type of plot |
place.tip.label |
A string indicating whether labels should be plotted to the right or to the left of the bubble plot |
show.node.label |
A logical indicating whether internal node labels should be plotted |
rot |
The number of degrees that the plot should be rotated |
edge.color |
A vector of colors for the tree edge segments |
node.color |
A vector of colors for the coloring the nodes |
tip.color |
A vector of colors for the coloring the tip labels |
edge.width |
A vector of line widths for the tree edges |
newpage |
Logical to control whether the device is cleared before plotting, useful for adding plot inside other plots |
... |
Additional parameters passed to the bubble plotting functions |
XXYY |
The out put from the phyloXXYY function |
square |
Logical indicating whether the plot 'bubbles' should be squares |
grid |
A logical indicating whether a grey grid should be plotted behind the bubbles |
Peter Cowan pdc@berkeley.edu
phyloXXYY, treePlot
##---- Should be DIRECTLY executable !! ---- ##-- ==> Define data, use random, ##-- or do help(data=index) for the standard data sets.
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.