Plot a phylo4 object
Plots the phylogenetic tree contained in a phylo4 or phylo4d
object.
plotOneTree( xxyy, type, show.tip.label, show.node.label, edge.color, node.color, tip.color, edge.width, rot )
xxyy |
A list created by the |
type |
A character string indicating the shape of plotted tree |
show.tip.label |
Logical, indicating whether tip labels should be shown |
show.node.label |
Logical, indicating whether node labels should be shown |
edge.color |
A vector of colors in the order of |
node.color |
A vector of colors indicating the colors of the node labels |
tip.color |
A vector of colors indicating the colors of the tip labels |
edge.width |
A vector in the order of |
rot |
Numeric indicating the rotation of the plot in degrees |
Returns no values, function invoked for the plotting side effect.
Peter Cowan pdc@berkeley.edu
treePlot, phyloXXYY
library(grid) data(geospiza) grid.newpage() xxyy <- phyloXXYY(geospiza) plotOneTree(xxyy, type = 'phylogram', show.tip.label = TRUE, show.node.label = TRUE, edge.color = 'black', node.color = 'orange', tip.color = 'blue', edge.width = 1, rot = 0 ) grid.newpage() pushViewport(viewport(w = 0.8, h = 0.8)) plotOneTree(xxyy, type = 'phylogram', show.tip.label = TRUE, show.node.label = TRUE, edge.color = 'black', node.color = 'orange', tip.color = 'blue', edge.width = 1, rot = 0 ) popViewport()
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.