phylobase: tip.data.plot – R documentation

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phylobase

tip.data.plot

Plotting trees and associated data

Description

Plotting phylogenetic trees and associated data

Usage

tip.data.plot(
  xxyy,
  type = c("phylogram", "cladogram", "fan"),
  show.tip.label = TRUE,
  show.node.label = FALSE,
  rot = 0,
  tip.plot.fun = grid.points,
  edge.color = "black",
  node.color = "black",
  tip.color = "black",
  edge.width = 1,
  ...
)

Arguments

`xxyy`	A list created by the `phyloXXYY` function
`type`	A character string indicating the shape of plotted tree
`show.tip.label`	Logical, indicating whether tip labels should be shown
`show.node.label`	Logical, indicating whether node labels should be shown
`rot`	Numeric indicating the rotation of the plot in degrees
`tip.plot.fun`	A function used to plot the data elements of a `phylo4d` object
`edge.color`	A vector of colors in the order of `edges(phy)`
`node.color`	A vector of colors indicating the colors of the node labels
`tip.color`	A vector of colors indicating the colors of the tip labels
`edge.width`	A vector in the order of `edges(phy)` indicating the widths of edge lines
`...`	Additional parameters passed to `tip.plot.fun`

Value

creates a plot on the current graphics device.

Author(s)

Peter Cowan

phylobase

Base Package for Phylogenetic Structures and Comparative Data

v0.8.10

GPL (>= 2)

Authors

R Hackathon et al. (alphabetically: Ben Bolker, Marguerite Butler, Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara, Emmanuel Paradis, Jim Regetz, Derrick Zwickl)

Initial release

tip.data.plot

Description

Usage

Arguments

Value

Author(s)

phylobase

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