Assign a new OTU Table to x
Assign a new OTU Table to x
otu_table(x) <- value ## S4 replacement method for signature 'phyloseq,otu_table' otu_table(x) <- value ## S4 replacement method for signature 'otu_table,otu_table' otu_table(x) <- value ## S4 replacement method for signature 'phyloseq,phyloseq' otu_table(x) <- value
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(Required).
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# data(GlobalPatterns) # # An example of pruning to just the first 100 taxa in GlobalPatterns. # ex2a <- prune_taxa(taxa_names(GlobalPatterns)[1:100], GlobalPatterns) # # The following 3 lines produces an ex2b that is equal to ex2a # ex2b <- GlobalPatterns # OTU <- otu_table(GlobalPatterns)[1:100, ] # otu_table(ex2b) <- OTU # identical(ex2a, ex2b) # print(ex2b) # # Relace otu_table by implying the component in context. # ex2c <- GlobalPatterns # otu_table(ex2c) <- ex2b # identical(ex2a, ex2c)
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