Parse mothur group file into a simple hash table.
The data.frame object
returned by this function is not immediately useable by other phyloseq
functions, and must be first parsed in conjunction with a separate mothur
"list" file. This function is made accessible to phyloseq users
for troubleshooting and inspection, but the link{import_mothur()} function
is suggested if the goal is to import the OTU clustering results from mothur
into phyloseq. You will need both a group file and a list file for that end.
import_mothur_groups(mothur_group_file)
mothur_group_file |
A character string indicating the location of the
mothur-produced group file in which the sample-source of each sequence
is recorded. See
|
A data.frame that is effectively a hash table between sequence names and their sample source.
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