phyloseq: index_reorder – R documentation

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index_reorder

Force index order of phyloseq objects

Force index order of phyloseq objects

index_reorder(ps, index_type)

## S4 method for signature 'phyloseq'
index_reorder(ps, index_type = "both")

`ps`	(Required). A `phyloseq-class` instance.
`index_type`	(Optional). A character string specifying the indices to properly order. Supported values are `c("both", "taxa", "samples")`. Default is `"both"`, meaning samples and taxa indices will be checked/re-ordered.

## data("GlobalPatterns")
## GP = index_reorder(GlobalPatterns)

Handling and analysis of high-throughput microbiome census data

v1.34.0

AGPL-3

Authors

Paul J. McMurdie <joey711@gmail.com>, Susan Holmes <susan@stat.stanford.edu>, with contributions from Gregory Jordan and Scott Chamberlain

Initial release

2019-04-23