Build phyloseq-class objects from their components.
phyloseq() is a constructor method, This is the main method
suggested for constructing an experiment-level (phyloseq-class)
object from its component data
(component data classes: otu_table-class, sample_data-class,
taxonomyTable-class, phylo-class).
phyloseq(...)
... |
One or more component objects among the set of classes
defined by the phyloseq package, as well as |
The class of the returned object depends on the argument class(es). For an experiment-level object, two or more component data objects must be provided. Otherwise, if a single component-class is provided, it is simply returned as-is. The order of arguments does not matter.
data(esophagus) x1 = phyloseq(otu_table(esophagus), phy_tree(esophagus)) identical(x1, esophagus) # # data(GlobalPatterns) # # GP <- GlobalPatterns # # phyloseq(sample_data(GP), otu_table(GP)) # # phyloseq(otu_table(GP), phy_tree(GP)) # # phyloseq(tax_table(GP), otu_table(GP)) # # phyloseq(phy_tree(GP), otu_table(GP), sample_data(GP)) # # phyloseq(otu_table(GP), tax_table(GP), sample_data(GP)) # # phyloseq(otu_table(GP), phy_tree(GP), tax_table(GP), sample_data(GP))
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