Show cutoff values available in a mothur file.
This is a helper function to report back to the user the different cutoff values available in a given mothur file – for instance, a list or shared file.
show_mothur_cutoffs(mothur_list_file)
mothur_list_file |
The file name and/or location as produced by mothur. |
A character vector of the different cutoff values contained in the file.
For a given set of arguments to the cluster() command from within
mothur, a number of OTU-clustering results are returned in the same
file. The exact cutoff values used by mothur can vary depending
on the input data/parameters. This simple function returns the cutoffs that were actually
included in the mothur output. This an important extra step prior to
importing data with the import_mothur function.
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