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R
phyloseq

taxa_names-methods

Get species / taxa names.

Description

Get species / taxa names.

Usage

taxa_names(physeq)

## S4 method for signature 'ANY'
taxa_names(physeq)

## S4 method for signature 'phyloseq'
taxa_names(physeq)

## S4 method for signature 'otu_table'
taxa_names(physeq)

## S4 method for signature 'taxonomyTable'
taxa_names(physeq)

## S4 method for signature 'sample_data'
taxa_names(physeq)

## S4 method for signature 'phylo'
taxa_names(physeq)

## S4 method for signature 'XStringSet'
taxa_names(physeq)

Arguments

Value

A character vector of the names of the species in physeq.

See Also

ntaxa

Examples

#
data("esophagus")
tree <- phy_tree(esophagus)
OTU1 <- otu_table(esophagus)
taxa_names(tree)
taxa_names(OTU1)
physeq1 <- phyloseq(OTU1, tree)
taxa_names(physeq1)
phyloseq

Handling and analysis of high-throughput microbiome census data

v1.34.0
AGPL-3
Authors
Paul J. McMurdie <joey711@gmail.com>, Susan Holmes <susan@stat.stanford.edu>, with contributions from Gregory Jordan and Scott Chamberlain
Initial release
2019-04-23

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