phyloseq: transpose-methods – R documentation

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transpose-methods

Transpose otu_table-class or phyloseq-class

Extends the base transpose method, t.

t(x)

## S4 method for signature 'otu_table'
t(x)

## S4 method for signature 'phyloseq'
t(x)

`x`	An `otu_table` or `phyloseq-class`.

The class of the object returned by t matches the class of the argument, x. The otu_table is transposed, and taxa_are_rows value is toggled.

data(GlobalPatterns)
otu_table(GlobalPatterns)
t( otu_table(GlobalPatterns) )

Handling and analysis of high-throughput microbiome census data

v1.34.0

AGPL-3

Authors

Paul J. McMurdie <joey711@gmail.com>, Susan Holmes <susan@stat.stanford.edu>, with contributions from Gregory Jordan and Scott Chamberlain

Initial release

2019-04-23