picante

Host-parasitoid food web data

K statistic of phylogenetic signal

Color tip labels based on trait

Calculates inter-community mean pairwise distance

Calculates inter-community mean nearest taxon distance

Correlations between species co-occurrence and phylogenetic distances

Quantile regression slopes between species co-occurrence and phylogenetic distances

Table of correlations and P-values

Match taxa in phylogeny and data

Species' evolutionary distinctiveness

Expected PD, PD Variance, and Edge Abundance Distribution of a phylogeny

Convert community data matrix to Phylocom sample

Mean nearest taxon distance

Mean pairwise distance

Calculates phylogenetic signal for data.frame of traits

Phylogenetic Bipartite Linear Model

Phylogenetic Community Dissimilarity

Calculate Faith's Phylogenetic Diversity

Phylogenetic estimation of traits for unobserved taxa

Phylocom default data

Measure phylogenetic signal

Phylogenetic index of beta-diversity PhyloSor

Null PhyloSor values of phylogenetic beta-diversity

Permutations to Test for Phylogenetic Signal in Community Composition

picante: Integrating Phylogenies and Ecology

Prune tree to match community data or trait data

Phylogenetic Species Diversity Metrics

Null models for community data matrix randomization

Rao's quadratic entropy

Read Phylocom sample

Convert Phylocom sample to community data matrix

Standardized effect size of MNTD

Standardized effect size of MPD

Standardized effect size of PD

Phylogenetic Species Richness Sample-Based Rarefaction Curve

Species co-occurrence distances

Regressions to Separate Phylogenetic Attraction and Repulsion

Taxonomic distinctiveness sensu Vane-Wright or May

Draw phylogeny with nodes at trait positions

Unweighted UniFrac distance between communities

Picante utility functions

Write a Phylocom community sample file

Write a Phylocom traits formatted file