Internal: create allele list out of character matrix
Creates a list of lists, such as required by alleledist,
from the charmatrix component of an
alleleobject.
unbuild.charmatrix(charmatrix,n.individuals,n.variables)
charmatrix |
matrix of characters in which there are two rows for
every individual corresponding to the two alleles in every locus
(column). Entries are allele codes but missing values are coded as
|
n.individuals |
integer. Number of individuals. |
n.variables |
integer. Number of loci. |
A list of lists. In the "outer" list, there are
n.variables lists, one for each locus. In the "inner" list, for every
individual there is a vector of two codes (typically characters, see
alleleinit) for the two alleles in that locus.
data(tetragonula) tnb <- coord2dist(coordmatrix=tetragonula.coord[1:50,],cut=50,file.format="decimal2",neighbors=TRUE) ta <- alleleconvert(strmatrix=tetragonula[1:50,]) tai <- alleleinit(allelematrix=ta,neighborhood=tnb$nblist,distance="none") str(unbuild.charmatrix(tai$charmatrix,50,13))
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