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pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling

An implementation of multiscale bootstrap resampling for assessing the uncertainty in hierarchical cluster analysis. It provides SI (selective inference) p-value, AU (approximately unbiased) p-value and BP (bootstrap probability) value for each cluster in a dendrogram.

Functions (8)

lung

DNA Microarray Data of Lung Tumors

msfit

Curve Fitting for Multiscale Bootstrap Resampling

msplot

Drawing the Results of Curve Fitting for Pvclust Object

plot.pvclust

Draws Dendrogram with P-values for Pvclust Object

print.pvclust

Print Function for Pvclust Object

pvclust

Calculating P-values for Hierchical Clustering

pvpick

Find Clusters with High/Low P-values

seplot

Diagnostic Plot for Standard Error of p-value

pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling

v2.2-0
GPL (>= 2)
Authors
Ryota Suzuki <suzuki@ef-prime.com>, Yoshikazu Terada <terada@sigmath.es.osaka-u.ac.jp>, Hidetoshi Shimodaira <shimo@i.kyoto-u.ac.jp>
Initial release
2019-11-19

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