Taxonomic MRCA
Taxonomic Least Inclusive Common Ancestor (MRCA)
taxonomy_mrca(ott_ids = NULL, ...) ## S3 method for class 'taxon_mrca' tax_rank(tax, ...) ## S3 method for class 'taxon_mrca' tax_name(tax, ...) ## S3 method for class 'taxon_mrca' ott_id(tax, ...) ## S3 method for class 'taxon_mrca' unique_name(tax, ...) ## S3 method for class 'taxon_mrca' tax_sources(tax, ...) ## S3 method for class 'taxon_mrca' flags(tax, ...) ## S3 method for class 'taxon_mrca' is_suppressed(tax, ...)
ott_ids |
a vector of ott ids for the taxa whose MRCA is to be found (numeric). |
... |
additional arguments to customize the API request (see
|
tax |
an object generated by the |
Given a set of OTT ids, get the taxon that is the most recent common ancestor (the MRCA) of all the identified taxa.
taxonomy_mrca returns a list about the
taxonomic information relating to the MRCA for the ott_ids
provided.
tax_rank returns a character vector of the
taxonomic rank for the MRCA.
tax_name returns a character vector the
Open Tree Taxonomy name for the MRCA.
ott_id returns a numeric vector of the ott id
for the MRCA.
## Not run: req <- taxonomy_mrca(ott_ids=c(515698,590452,643717)) tax_rank(req) tax_name(req) ott_id(req) ## End(Not run)
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