Taxon information
Information about taxa.
taxonomy_taxon_info( ott_ids, include_children = FALSE, include_lineage = FALSE, include_terminal_descendants = FALSE, ... ) ## S3 method for class 'taxon_info' tax_rank(tax, ...) ## S3 method for class 'taxon_info' tax_name(tax, ...) ## S3 method for class 'taxon_info' unique_name(tax, ...) ## S3 method for class 'taxon_info' synonyms(tax, ...) ## S3 method for class 'taxon_info' ott_id(tax, ...) ## S3 method for class 'taxon_info' tax_sources(tax, ...) ## S3 method for class 'taxon_info' is_suppressed(tax, ...) ## S3 method for class 'taxon_info' flags(tax, ...)
ott_ids |
the ott ids of the taxon of interest (numeric or character containing only numbers) |
include_children |
whether to include information about all
the children of this taxon. Default |
include_lineage |
whether to include information about all
the higher level taxa that include the |
include_terminal_descendants |
whether to include the list of
terminal |
... |
additional arguments to customize the API request (see
|
tax |
an object generated by the |
Given a vector of ott ids, taxonomy_taxon_info returns
information about the specified taxa.
The functions tax_rank, tax_name, and
synonyms can extract this information from an object
created by the taxonomy_taxon_info().
taxonomy_taxon_info returns a list detailing
information about the taxa. tax_rank and
tax_name return a vector. synonyms returns a
list whose elements are the synonyms for each of the
ott_id requested.
tnrs_match_names to obtain ott_id
from a taxonomic name.
## Not run: req <- taxonomy_taxon_info(ott_id=515698) tax_rank(req) tax_name(req) synonyms(req) ## End(Not run)
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