rstatix: adjust_pvalue – R documentation

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adjust_pvalue

Adjust P-values for Multiple Comparisons

A pipe-friendly function to add an adjusted p-value column into a data frame. Supports grouped data.

adjust_pvalue(data, p.col = NULL, output.col = NULL, method = "holm")

`data`	a data frame containing a p-value column
`p.col`	column name containing p-values
`output.col`	the output column name to hold the adjusted p-values
`method`	method for adjusting p values (see `p.adjust`). Allowed values include "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none". If you don't want to adjust the p value (not recommended), use p.adjust.method = "none".

a data frame

# Perform pairwise comparisons and adjust p-values
ToothGrowth %>%
 t_test(len ~ dose) %>%
 adjust_pvalue()

Pipe-Friendly Framework for Basic Statistical Tests

v0.7.0

GPL-2

Authors

Alboukadel Kassambara [aut, cre]

Initial release