Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

countfreelists

The number of free lists available and annotation lines in an ACNUC server


Description

Returns the number of free lists available list of names of annotation lines in the opened ACNUC database.

Usage

countfreelists(socket = autosocket())
cfl(socket = autosocket())

Arguments

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

Value

a list with the following 2 components:

free

numeric. The number of free lists

annotlines

vector of strings. Names of annotation lines

Author(s)

J.R. Lobry

References

citation("seqinr")

See Also

Examples

## Not run:  # Need internet connection
  choosebank("emblTP")
  (rescountfreelists <- countfreelists())
  stopifnot(all(rescountfreelists$annotlines == 
   c("ALL", "AC",  "PR",  "DT",  "KW",  "OS",  "OC",
   "OG",  "RN",  "RC",  "RP",  "RX", "RG",  "RA",  "RT",  "RL",  "DR", 
   "CC",  "AH",  "AS",  "FH",  "FT",  "CO",  "SQ", "SEQ")))
  closebank()
  
## End(Not run)

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16
GPL (>= 2)
Authors
Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Initial release
2022-05-19

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.