Number of subsequences in an ACNUC list
Returns the number of subsequences in the ACNUC list of rank lrank.
countsubseqs(lrank, socket = autosocket()) css(lrank, socket = autosocket())
lrank |
the rank of the ACNUC list to consider. |
socket |
an object of class |
Numeric.
J.R. Lobry
citation("seqinr")
choosebank, query, glr to
get a list rank from its name.
## Not run: # Need internet connection
choosebank("emblTP")
mylist<-query("mylist", "N=@", virtual = TRUE) # select all (seqs + subseqs)
mylist$nelem # 14138094 seqs + subseqs
stopifnot(mylist$nelem == 14138094)
css(glr("mylist")) # 1604500 subsequences only
stopifnot(css(glr("mylist")) == 1604500)
closebank()
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.