seqinr: fasta – R documentation

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fasta

Example of results obtained after a call to read.alignment

Description

This data set gives an example of a amino acids alignment obtained after a call to the function read.alignment on an alignment file in "fasta" format.

Usage

data(fasta)

Format

A List of class alignment

Source

https://pbil.univ-lyon1.fr/help/formats.html/

References

Pearson W.R. and Lipman D.J. (1988) Improved tools for biological sequence comparison..Proc Natl Acad Sci U S A. 85(8):2444-8.

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16

GPL (>= 2)

Authors

Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]

Initial release

2022-05-19