Generic function to get the location of subsequences on the parent sequence
This function works only with subsequences from an ACNUC server.
getLocation(object, ...) ## S3 method for class 'SeqAcnucWeb' getLocation(object, ..., socket = autosocket())
object |
an object of the class |
socket |
an object of class |
... |
further arguments passed to or from other methods |
A list giving the positions of the sequence on the parent sequence. If the sequence is a subsequence (e.g. coding sequence), the function returns the position of each exon on the parent sequence. NA is returned for parent sequences and a warning is isued.
D. Charif, J.R. Lobry, L. Palmeira
citation("seqinr")
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# List all available methods for getLocation generic function:
#
methods(getLocation)
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# Example with a subsequence from an ACNUC server:
#
## Not run:
# Need internet connection
choosebank("emblTP")
fc <- query("fc", "sp=felis catus et t=cds et o=mitochondrion")
getLocation(fc$req[[5]])
closebank()
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.