seqinr: getType – R documentation

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getType

To get available subsequence types in an opened ACNUC database

Description

This function returns all subsequence types (e.g. CDS, TRNA) present in an opened ACNUC database, using default database if no socket is provided.

Usage

getType(socket = autosocket())

Arguments

socket

an object of class sockconn connecting to a remote ACNUC database (default is a socket to the last opened database).

Value

a list containing a short description for each subsequence type.

Author(s)

D. Charif, J.R. Lobry

References

citation("seqinr")

Examples

## Not run: 
# Need internet connection
  choosebank("emblTP")
  getType()
## End(Not run)

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16

GPL (>= 2)

Authors

Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]

Initial release

2022-05-19