Extract sequence identified by name or by number from an ACNUC server
Get length characters from sequence identified by name or by number
starting from position start (counted from 1).
gfrag(what, start, length, idby = c("name", "number"), socket = autosocket())what |
A sequence name or number |
start |
Start position from 1 |
length |
Number of requested characters (answer may be shorter) |
idby |
Is the sequence identified by name or number? Default to name |
socket |
an object of class |
A string of characters with at most length characters (may be
shorter than asked for). NA is returned and a warning is issued in
case of problem (non existent sequence for instance).
J.R. Lobry
citation("seqinr")
## Not run: # Need internet connection
choosebank("emblTP")
gfrag("LMFLCHR36", start = 1, length = 3529852) -> myseq
stopifnot(nchar(myseq) == 3529852)
closebank()
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.