Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

plotPanels

Representation of Amplicon Size Ranges of a STR kit.


Description

Plot amplicon size ranges grouped by dye color.

Usage

plotPanels(kitname, data, xlim = NULL, cex = 0.75, alpha = 0.5)

Arguments

kitname

string of characters for the kit name.

data

an output from the readPanels function.

xlim

x-axis range.

cex

character expansion factor.

alpha

alpha transparency chanel for colors.

Value

none

Author(s)

J.R. Lobry

See Also

Examples

path1 <- system.file("abif/AmpFLSTR_Panels_v1.txt", package = "seqinr")
res1 <- readPanels(path1)

par(mfrow = c(2,1))
plotPanels("Identifiler_v1", res1)
plotPanels("SEfiler_v1", res1)

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16
GPL (>= 2)
Authors
Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Initial release
2022-05-19

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.