Save sequence names or accession numbers into a file
This function retrieves all sequence names or all accession number from an ACNUC list and saves them into a file.
savelist(lrank, type = c("N", "A"),
filename = paste(gln(lrank), ifelse(type == "N", "mne", "acc"),
sep = "."),socket = autosocket(), warnme = TRUE)lrank |
the rank of the ACNUC list to consider. |
type |
use "N" for sequence names (mnemonics) and "A" for accession numbers. Default is "N". |
filename |
a string of character giving the name of the file to save results. |
socket |
an object of class |
warnme |
if TRUE a message is issued on the console when complete. |
none.
J.R. Lobry
citation("seqinr")
choosebank, query, glr to
get a list rank from its name, clfcd for the inverse operation
of savelist
## Not run:
### Need internet connection
choosebank("emblTP")
mylist <- query("mylist", "sp=felis catus et t=cds", virtual=TRUE)
savelist(glr("mylist"))
# 603 sequence mnemonics written into file: MYLIST.mne
savelist(glr("mylist"), type = "A")
# 603 sequence accession numbers written into file: MYLIST.acc
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.