seqinr: setlistname – R documentation

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setlistname

Sets the name of an ACNUC list identified by its rank

Description

This is a low level function to set the name of a list from an ACNUC server. It should not be used directly by end users.

Usage

setlistname(lrank, name = "list1", socket = autosocket())

Arguments

`lrank`	the list rank on the ACNUC server
`name`	the name to use for this list
`socket`	an object of class `sockconn` connecting to a remote ACNUC database (default is a socket to the last opened database).

Value

A single numeric value corresponding to:

`NA`	Empty answer from server.
`0`	OK.
`3`	if another list with that name already existed and was deleted.
`4`	no list of rank `lrank` exists.

Author(s)

J.R. Lobry

References

http://doua.prabi.fr/databases/acnuc.html

citation("seqinr")

Examples

## Not run:  
  ### Need internet connection
  choosebank("emblTP")
  mylist <- query("mylist", "sp=felis catus et t=CDS", virtual = TRUE)
  # Change list name on server:
  setlistname(lrank = glr("mylist"), name = "feliscatus") # 0, OK.
  glr("mylist") # 0, list doesn't exist no more.
  glr("feliscatus") # 2, this list exists.
  # Note the danger here: the object mylist is still present in the user workspace
  # while the corresponding list was deleted from server.
  
## End(Not run)

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16

GPL (>= 2)

Authors

Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]

Initial release

2022-05-19