seqinr: ucoweight – R documentation

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ucoweight

Weight of each synonymous codon

Description

Returns a list containing, for each of the 20 amino acids + STOP codon, the codon usage bias of each of the synonymous codon according to a given codon sequence.

Usage

ucoweight(sequence, numcode = 1)

Arguments

`sequence`	A nucleic acids sequence
`numcode`	The genetic code number as in `translate`

Value

a list containing, for each of the 20 amino acids and STOP codon (list tags), the weight of each synonymous codon (including the original one).

Author(s)

L. Palmeira

References

citation("seqinr")

Examples

data(ec999)
  ucoweight(ec999[1][[1]])

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16

GPL (>= 2)

Authors

Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]

Initial release

2022-05-19