seqinr: where.is.this.acc – R documentation

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where.is.this.acc

Scans databases for a given sequence accession number

Description

This function loops over all availabale ACNUC databases to look for a given sequence accession number. This is useful when you have a sequence accession number and you don't know in which database it is present.

Usage

where.is.this.acc(acc,  stopAtFirst = TRUE, ...)

Arguments

`acc`	An accession number as a string of characters such as `"NC_001416"`.
`stopAtFirst`	Logical. If TRUE, the default, the function stops at the first database where the accession number is found.
`...`	Arguments passed to the function `choosebank`.

Value

The function resturns invisibly a vector of strings of characters for the names of the ACNUC databases in which the accession number was found.

Author(s)

J.R. Lobry

References

citation("seqinr")

Examples

## Not run: # Need internet connection
  where.is.this.acc("NC_001416") # first found in phever2dna bank (2016-06-01)
  
## End(Not run)

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16

GPL (>= 2)

Authors

Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]

Initial release

2022-05-19