Salamander mating data
Data from a salamander mating experiment discussed by McCullagh and Nelder (1989, Ch. 14). Twenty males and twenty females from two populations (Rough Butt and Whiteside) were each paired with 6 individuals from their own or from the other population. The experiments were later published by Arnold et al. (1996).
data("salamander")The data frame includes 360 observations on the following variables:
Index of the female;
Index of the male;
Whether the pair successfully mated or not;
Population of origin of female;
Population of origin of male;
Interaction term between TypeF and TypeM;
A factor with levels Summer and Fall;
Index of experiment
The data frame was borrowed from the HGLMMM package (Molas and Lesaffre, 2011), version 0.1.2.
Arnold, S.J., Verrell, P.A., and Tilley S.G. (1996) The evolution of asymmetry in sexual isolation: a model and a test case. Evolution 50, 1024-1033.
McCullagh, P. and Nelder, J.A. (1989). Generalized Linear Models, 2nd edition. London: Chapman & Hall.
Molas, M., Lesaffre, E. (2011) Hierarchical Generalized Linear Models: The R Package HGLMMM. Journal of Statistical Software 39, 1-20.
data("salamander")
## Not run:
HLfit(cbind(Mate,1-Mate)~TypeF+TypeM+TypeF*TypeM+(1|Female)+(1|Male),
family=binomial(),data=salamander,method="ML")
# equivalent fo using fitme(), but here a bit faster
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.