Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!
Get Started for Free

Pairwise

Generic Pairwise Interaction model


Description

Creates an instance of a pairwise interaction point process model which can then be fitted to point pattern data.

Usage

Pairwise(pot, name, par, parnames, printfun)

Arguments

pot

An R language function giving the user-supplied pairwise interaction potential.

name

Character string.

par

List of numerical values for irregular parameters

parnames

Vector of names of irregular parameters

printfun

Do not specify this argument: for internal use only.

Details

This code constructs a member of the pairwise interaction family pairwise.family with arbitrary pairwise interaction potential given by the user.

Each pair of points in the point pattern contributes a factor h(d) to the probability density, where d is the distance between the two points. The factor term h(d) is

h(d) = exp(-theta * pot(d))

provided pot(d) is finite, where theta is the coefficient vector in the model.

The function pot must take as its first argument a matrix of interpoint distances, and evaluate the potential for each of these distances. The result must be either a matrix with the same dimensions as its input, or an array with its first two dimensions the same as its input (the latter case corresponds to a vector-valued potential).

If irregular parameters are present, then the second argument to pot should be a vector of the same type as par giving those parameter values.

The values returned by pot may be finite numeric values, or -Inf indicating a hard core (that is, the corresponding interpoint distance is forbidden). We define h(d) = 0 if pot(d) = -Inf. Thus, a potential value of minus infinity is always interpreted as corresponding to h(d) = 0, regardless of the sign and magnitude of theta.

Value

An object of class "interact" describing the interpoint interaction structure of a point process.

Author(s)

and Rolf Turner r.turner@auckland.ac.nz

See Also

Examples

#This is the same as StraussHard(r=0.7,h=0.05)
   strpot <- function(d,par) {
         r <- par$r
         h <- par$h
         value <- (d <= r)
         value[d < h] <- -Inf
         value
   }
   mySH <- Pairwise(strpot, "StraussHard process", list(r=0.7,h=0.05),
           c("interaction distance r", "hard core distance h"))
   data(cells)
   ppm(cells, ~ 1, mySH, correction="isotropic")

   # Fiksel (1984) double exponential interaction
   # see Stoyan, Kendall, Mecke 1987 p 161

   fikspot <- function(d, par) {
      r <- par$r
      h <- par$h
      zeta <- par$zeta
      value <- exp(-zeta * d)
      value[d < h] <- -Inf
      value[d > r] <- 0
      value
   }
   Fiksel <- Pairwise(fikspot, "Fiksel double exponential process",
                      list(r=3.5, h=1, zeta=1),
                      c("interaction distance r",
                        "hard core distance h",
                        "exponential coefficient zeta"))
   data(spruces)
   fit <- ppm(unmark(spruces), ~1, Fiksel, rbord=3.5)
   fit
   plot(fitin(fit), xlim=c(0,4))
   coef(fit)
   # corresponding values obtained by Fiksel (1984) were -1.9 and -6.0

spatstat.core

Core Functionality of the 'spatstat' Family

v2.1-2
GPL (>= 2)
Authors
Adrian Baddeley [aut, cre], Rolf Turner [aut], Ege Rubak [aut], Kasper Klitgaard Berthelsen [ctb], Achmad Choiruddin [ctb], Jean-Francois Coeurjolly [ctb], Ottmar Cronie [ctb], Tilman Davies [ctb], Julian Gilbey [ctb], Yongtao Guan [ctb], Ute Hahn [ctb], Kassel Hingee [ctb], Abdollah Jalilian [ctb], Marie-Colette van Lieshout [ctb], Greg McSwiggan [ctb], Tuomas Rajala [ctb], Suman Rakshit [ctb], Dominic Schuhmacher [ctb], Rasmus Plenge Waagepetersen [ctb], Hangsheng Wang [ctb]
Initial release
2021-04-17

We don't support your browser anymore

Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.